Update your system and install libraries. This is a Video on how to use this whole setup. Protist Object and Semantic Detection DatasetĠ.9839 (Images must be 960x704 - model failed) Nematode Object and Semantic Detection Dataset Nematode Trophic Classification by Body Dataset Nematode Trophic Classification by Head Dataset Just detection of generic cells and differentiates between the active and inactive stages of their life cycle.Įither classifies nematodes according to trophic level (CNN), or detects generic nematodes (Object Detection), or detects nematodes pixel wise (Semantic Segmentation) for biomass estimation Available datasets and trained weight filesĪll datasets used are available here for download, along with their neural network weights for detection/classification. So far this project either detects or classifies the following organisms:Ĭolsterium - Cylindrocystis - Lepocinclis - Micrasterias - Paramecium - Peridinium - Pinnularia - Pleurotaenium - Pyrocystis - Volvox - Ceratium - Coleps - Collodictyon - Didinium - Dinobryon - Frontonia - Phacus Provided here are all the necessary scripts, datasets, and weights. ![]() This is a collection of datasets and neural networks to detect or classify microorganisms from microscope images. Sari Sabban - Tarik Alafif - Abdullah Alotebi - Sally Warring - Zainab Alsaeedi - Stefan Geisen - Wenjia Wu A collection of datasets and neural networks for microorganism image classification.
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